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We present FARCI (Fast and Robust Connectome Inference), a numerically efficient and a user-friendly implementation of neuronal connectome from two photon calcium imaging data.  FARCI outputs pairwise association matrix, inferred network matrix, circular graph of the neuronal connectome and, when spatial information is available, neuronal connectome based on actual position of neurons. . These analyses can be applied individually or in a pipeline.

Installation and Usage

Please visit our Installation and Tutorials pages for detailed instructions about how to use FARCI.



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If you find problems with the software or errors in the documentation, report the issue in our Github repository. If you would like to contribute please contact the authors.

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